nohup: ignoring input Found CMake version 3.27.9 cmake -DCMAKE_MODULE_PATH=/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/ecbuild-3.7.2-vih6xsf/share/ecbuild/cmake /mnt/beegfs/caroline.viezel/mpas-bundle -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- The Fortran compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/gcc-12.2.0-mxajvnuix37kg5dxz46b32nd6qvnn2ll/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/gcc-12.2.0-mxajvnuix37kg5dxz46b32nd6qvnn2ll/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/gcc-12.2.0-mxajvnuix37kg5dxz46b32nd6qvnn2ll/bin/gfortran - skipped -- Found Git: /usr/bin/git (found version "2.27.0") -- ecbuild 3.7.2 /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/ecbuild-3.7.2-vih6xsf/share/ecbuild/cmake -- cmake 3.27.9 /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/cmake-3.27.9-46ruddm/bin/cmake -- --------------------------------------------------------- -- Performing Test mpas-bundle_C_FLAG_TEST_1 -- Performing Test mpas-bundle_C_FLAG_TEST_1 - Success -- Added C flag [-pipe] -- Performing Test mpas-bundle_CXX_FLAG_TEST_1 -- Performing Test mpas-bundle_CXX_FLAG_TEST_1 - Success -- Added CXX flag [-pipe] -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Check size of off_t -- Check size of off_t - done -- --------------------------------------------------------- -- --------------------------------------------------------- -- [mpas-bundle] (3.0.0) [f6cec3e] -- Feature TESTS enabled INFOCMAKE_MODULE_PATH -- --------------------------------------------------------- -- Skipping bundle project eckit -- --------------------------------------------------------- -- Skipping bundle project fckit -- --------------------------------------------------------- -- Skipping bundle project atlas -- --------------------------------------------------------- -- Skipping bundle project ropp-ufo -- --------------------------------------------------------- -- Skipping bundle project rttov -- --------------------------------------------------------- -- Adding bundle project oops -- Cloning oops from https://github.com/JCSDA/oops.git into /mnt/beegfs/caroline.viezel/mpas-bundle/oops... -- /mnt/beegfs/caroline.viezel/mpas-bundle/oops retrieved. -- Updating oops to TAG d772173... -- git fetch --all @ /mnt/beegfs/caroline.viezel/mpas-bundle/oops -- git fetch --all --tags @ /mnt/beegfs/caroline.viezel/mpas-bundle/oops -- git checkout d772173 @ /mnt/beegfs/caroline.viezel/mpas-bundle/oops -- Found ecbuild: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/ecbuild-3.7.2-vih6xsf/./share/ecbuild/cmake (found suitable version "3.7.2", minimum required is "3.3.2") -- --------------------------------------------------------- -- [oops] (1.10.0) [d772173] -- Feature TESTS enabled -- Could NOT find MKL (missing: MKL_LIBRARIES MKL_INCLUDE_DIRS) -- Looking for Fortran sgemm -- Looking for Fortran sgemm - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Found BLAS: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/openblas-0.3.24-o2yjimd/lib/libopenblas.so -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- Found LAPACK: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/openblas-0.3.24-o2yjimd/lib/libopenblas.so;-lpthread;-lm;-ldl -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX Fortran -- Found MPI_C: /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/mpich-4.2.3-bryzizdra3okiwu3vbsxlnk323nrup5s/lib/libmpi.so (found version "4.1") -- Found MPI_CXX: /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/mpich-4.2.3-bryzizdra3okiwu3vbsxlnk323nrup5s/lib/libmpicxx.so (found version "4.1") -- Found MPI_Fortran: /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/mpich-4.2.3-bryzizdra3okiwu3vbsxlnk323nrup5s/lib/libmpifort.so (found version "4.1") -- Found MPI: TRUE (found version "4.1") found components: C CXX Fortran -- Found MPI: TRUE (found version "4.1") -- Found NetCDF: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/include;/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/include (found version "4.9.2") found components: C Fortran -- FindNetCDF defines targets: -- - NetCDF_VERSION [4.9.2] -- - NetCDF_PARALLEL [TRUE] -- - NetCDF_C_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/bin/nc-config] -- - NetCDF::NetCDF_C [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/lib/libnetcdf.so -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/bin/nf-config] -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/lib/libnetcdff.so CMake Warning (dev) at oops/CMakeLists.txt:60 (find_package): Policy CMP0144 is not set: find_package uses upper-case _ROOT variables. Run "cmake --help-policy CMP0144" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Environment variable BOOST_ROOT is set to: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/boost-1.84.0-ex6thn7 For compatibility, find_package is ignoring the variable, but code in a .cmake module might still use it. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/boost-1.84.0-ex6thn7/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found suitable version "1.84.0", minimum required is "1.64.0") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- Found addr2line at /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/binutils-2.43.1-pdzg4agwdh7fx7rczycpnmp6uzaqugss/bin/addr2line. -- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line -- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line - Failed -- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line_nognus -- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line_nognus - Failed -- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line_gnus -- Performing Test OOPS_STACKTRACE_AVAILABLE_addr2line_gnus - Failed -- Performing Test OOPS_STACKTRACE_AVAILABLE_default -- Performing Test OOPS_STACKTRACE_AVAILABLE_default - Success -- Using this provider for stacktraces: default. -- --------------------------------------------------------- -- Adding bundle project vader -- Cloning vader from https://github.com/JCSDA/vader.git into /mnt/beegfs/caroline.viezel/mpas-bundle/vader... -- /mnt/beegfs/caroline.viezel/mpas-bundle/vader retrieved. -- Updating vader to TAG 6d56a1e... -- git fetch --all @ /mnt/beegfs/caroline.viezel/mpas-bundle/vader -- git fetch --all --tags @ /mnt/beegfs/caroline.viezel/mpas-bundle/vader -- git checkout 6d56a1e @ /mnt/beegfs/caroline.viezel/mpas-bundle/vader -- --------------------------------------------------------- -- [vader] (1.7.0) [6d56a1e] -- Feature TESTS enabled -- VADER variables -- - ENABLE_VADER_DOC: OFF CMake Warning (dev) at vader/CMakeLists.txt:30 (find_package): Policy CMP0144 is not set: find_package uses upper-case _ROOT variables. Run "cmake --help-policy CMP0144" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Environment variable BOOST_ROOT is set to: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/boost-1.84.0-ex6thn7 For compatibility, find_package is ignoring the variable, but code in a .cmake module might still use it. This warning is for project developers. Use -Wno-dev to suppress it. -- Found MPI: TRUE (found version "4.1") found components: C Fortran -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX Fortran -- Found MPI: TRUE (found version "4.1") found components: CXX Fortran -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- Found MPI: TRUE (found version "4.1") -- Found NetCDF: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/include;/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/include (found version "4.9.2") found components: C Fortran -- FindNetCDF defines targets: -- - NetCDF_VERSION [4.9.2] -- - NetCDF_PARALLEL [TRUE] -- - NetCDF_C_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/bin/nc-config] -- - NetCDF::NetCDF_C [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/lib/libnetcdf.so -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/bin/nf-config] -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/lib/libnetcdff.so -- GSW NOT FOUND: Excluding Marine Recipes -- --------------------------------------------------------- -- Adding bundle project saber -- Cloning saber from https://github.com/JCSDA/saber.git into /mnt/beegfs/caroline.viezel/mpas-bundle/saber... -- /mnt/beegfs/caroline.viezel/mpas-bundle/saber retrieved. -- Updating saber to TAG bba6f7e... -- git fetch --all @ /mnt/beegfs/caroline.viezel/mpas-bundle/saber -- git fetch --all --tags @ /mnt/beegfs/caroline.viezel/mpas-bundle/saber -- git checkout bba6f7e @ /mnt/beegfs/caroline.viezel/mpas-bundle/saber -- --------------------------------------------------------- -- [saber] (1.10.0) [bba6f7e] -- Feature TESTS enabled -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX Fortran -- Found MPI: TRUE (found version "4.1") found components: Fortran -- Found MPI: TRUE (found version "4.1") -- Found NetCDF: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/include;/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/include (found version "4.9.2") found components: C Fortran -- FindNetCDF defines targets: -- - NetCDF_VERSION [4.9.2] -- - NetCDF_PARALLEL [TRUE] -- - NetCDF_C_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/bin/nc-config] -- - NetCDF::NetCDF_C [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/lib/libnetcdf.so -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/bin/nf-config] -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/lib/libnetcdff.so -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- Could NOT find MKL (missing: MKL_LIBRARIES MKL_INCLUDE_DIRS) CMake Warning (dev) at /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/cmake-3.27.9-46ruddm/share/cmake-3.27/Modules/CMakeFindDependencyMacro.cmake:76 (find_package): Policy CMP0144 is not set: find_package uses upper-case _ROOT variables. Run "cmake --help-policy CMP0144" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Environment variable BOOST_ROOT is set to: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/boost-1.84.0-ex6thn7 For compatibility, find_package is ignoring the variable, but code in a .cmake module might still use it. Call Stack (most recent call first): /mnt/beegfs/caroline.viezel/build-jedi/oops/oops-import.cmake:39 (find_dependency) /mnt/beegfs/caroline.viezel/build-jedi/oops/oops-config.cmake:83 (include) saber/CMakeLists.txt:52 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/boost-1.84.0-ex6thn7/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found version "1.84.0") -- Could NOT find MKL (missing: MKL_LIBRARIES MKL_INCLUDE_DIRS) -- Found PkgConfig: /usr/bin/pkg-config (found version "1.4.2") -- SABER block GSI is NOT enabled -- SABER block FastLAM spectral layer is enabled -- SABER block SPECTRALB is enabled -- SABER instrumentation is not enabled -- Offline code coverage is not enabled -- Setup QUENCH data links -- SABER tests activated: -- - TIER 1 base -- - TIER 1 FastLAM-specific -- - TIER 1 FastLAM-specific - FFTW -- - TIER 1 SPECTRALB-specific -- - TIER 1 VADER-specific -- Setup SABER directories and links -- Tests parallel configuration: MPI: 1 / OMP: 1 -- Tests parallel configuration: MPI: 2 / OMP: 1 -- Tests parallel configuration: MPI: 4 / OMP: 1 -- SABER documentation is not enabled -- --------------------------------------------------------- -- Adding bundle project crtm -- Cloning crtm from https://github.com/JCSDA/CRTMv3.git into /mnt/beegfs/caroline.viezel/mpas-bundle/crtm... -- /mnt/beegfs/caroline.viezel/mpas-bundle/crtm retrieved. -- Updating crtm to TAG 73102a2... -- git fetch --all @ /mnt/beegfs/caroline.viezel/mpas-bundle/crtm -- git fetch --all --tags @ /mnt/beegfs/caroline.viezel/mpas-bundle/crtm -- git checkout 73102a2 @ /mnt/beegfs/caroline.viezel/mpas-bundle/crtm CRTM_INSTALL_PREFIX set to /mnt/beegfs/caroline.viezel/build-jedi/lib -- [crtm] (3.1.1) [f6cec3e] CMAKE_INSTALL_PREFIX set to /usr/local CMAKE_INSTALL_LIBDIR set to lib64 CMAKE_LIBRARY_OUTPUT_DIRECTORY set to /mnt/beegfs/caroline.viezel/build-jedi/lib -- Found OpenMP: TRUE (found version "4.5") found components: Fortran -- Found NetCDF: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/include (found version "4.9.2") found components: Fortran -- FindNetCDF defines targets: -- - NetCDF::NetCDF_Fortran [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/lib/libnetcdff.so] -- Building tests for CRTM v3.1.1. -- Downloading CRTM coeffs files from: https://bin.ssec.wisc.edu/pub/s4/CRTM//fix_REL-3.1.1.2.tgz to /mnt/beegfs/caroline.viezel/build-jedi/test_data/3.1.1/fix_REL-3.1.1.2.tgz -- [download 0% complete] -- [download 1% complete] -- [download 2% complete] -- [download 3% complete] -- [download 4% complete] -- [download 5% complete] -- [download 6% complete] -- [download 7% complete] -- [download 8% complete] -- [download 9% complete] -- [download 10% complete] -- [download 11% complete] -- [download 12% complete] -- [download 13% complete] -- [download 14% complete] -- [download 15% complete] -- [download 16% complete] -- [download 17% complete] -- [download 18% complete] -- [download 19% complete] -- [download 20% complete] -- [download 21% complete] -- [download 22% complete] -- 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[download 97% complete] -- [download 98% complete] -- [download 99% complete] -- [download 100% complete] -- Checking if /mnt/beegfs/caroline.viezel/build-jedi/test_data/3.1.1/fix_REL-3.1.1.2 already exists... -- Untarring the downloaded file (~2 minutes) to /mnt/beegfs/caroline.viezel/build-jedi/test_data/3.1.1 -- Configuration summary -- Project name : crtm -- Project version : 3.1.1 -- Fortran compiler : /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/gcc-12.2.0-mxajvnuix37kg5dxz46b32nd6qvnn2ll/bin/gfortran -- Fortran compiler flags : -D_REAL8_ -ffree-line-length-none -- Build type : Release -- Fortran compiler flags for release : -O3 -funroll-all-loops -fopenmp -finline-functions -- --------------------------------------------------------- -- Adding bundle project ioda-data -- Cloning ioda-data from https://github.com/JCSDA-internal/ioda-data.git into /mnt/beegfs/caroline.viezel/mpas-bundle/ioda-data... -- /mnt/beegfs/caroline.viezel/mpas-bundle/ioda-data retrieved. -- Updating ioda-data to TAG bcb0754... -- git fetch --all @ /mnt/beegfs/caroline.viezel/mpas-bundle/ioda-data -- git fetch --all --tags @ /mnt/beegfs/caroline.viezel/mpas-bundle/ioda-data -- git checkout bcb0754 @ /mnt/beegfs/caroline.viezel/mpas-bundle/ioda-data -- --------------------------------------------------------- -- Adding bundle project ioda -- Cloning ioda from https://github.com/JCSDA/ioda.git into /mnt/beegfs/caroline.viezel/mpas-bundle/ioda... -- /mnt/beegfs/caroline.viezel/mpas-bundle/ioda retrieved. -- Updating ioda to TAG d49ed17... -- git fetch --all @ /mnt/beegfs/caroline.viezel/mpas-bundle/ioda -- git fetch --all --tags @ /mnt/beegfs/caroline.viezel/mpas-bundle/ioda -- git checkout d49ed17 @ /mnt/beegfs/caroline.viezel/mpas-bundle/ioda -- --------------------------------------------------------- -- [ioda] (2.9.0) [d49ed17] -- Feature TESTS enabled -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: C CXX Fortran -- Check if compiler accepts -pthread -- Check if compiler accepts -pthread - yes -- Found HDF5: hdf5-shared (found version "1.14.3") found components: C HL -- Found LAPACK: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/openblas-0.3.24-o2yjimd/lib/libopenblas.so;-pthread;-lm;-ldl CMake Warning (dev) at /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/cmake-3.27.9-46ruddm/share/cmake-3.27/Modules/CMakeFindDependencyMacro.cmake:76 (find_package): Policy CMP0144 is not set: find_package uses upper-case _ROOT variables. Run "cmake --help-policy CMP0144" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Environment variable BOOST_ROOT is set to: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/boost-1.84.0-ex6thn7 For compatibility, find_package is ignoring the variable, but code in a .cmake module might still use it. Call Stack (most recent call first): /mnt/beegfs/caroline.viezel/build-jedi/oops/oops-import.cmake:39 (find_dependency) /mnt/beegfs/caroline.viezel/build-jedi/oops/oops-config.cmake:83 (include) ioda/CMakeLists.txt:49 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- Found udunits: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/udunits-2.2.28-kk6rhhk/lib/libudunits2.so (Required is at least version "2.2.0") -- Found NetCDF: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/include;/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/include (found version "4.9.2") found components: Fortran -- FindNetCDF defines targets: -- - NetCDF_VERSION [4.9.2] -- - NetCDF_PARALLEL [TRUE] -- - NetCDF_C_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/bin/nc-config] -- - NetCDF::NetCDF_C [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/lib/libnetcdf.so -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/bin/nf-config] -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/lib/libnetcdff.so -- Found Boost: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/boost-1.84.0-ex6thn7/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found suitable version "1.84.0", minimum required is "1.64.0") -- Found NetCDF: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/include;/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/include;/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-cxx4-4.3.1-636s4cb/include (found version "4.9.2") found components: CXX -- FindNetCDF defines targets: -- - NetCDF_VERSION [4.9.2] -- - NetCDF_PARALLEL [TRUE] -- - NetCDF_CXX_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-cxx4-4.3.1-636s4cb/bin/ncxx4-config] -- - NetCDF::NetCDF_CXX [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-cxx4-4.3.1-636s4cb] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-cxx4-4.3.1-636s4cb/lib/libnetcdf_c++4.so -- Found Python3: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/python-venv-1.0-ueqpdcd/bin/python3.11 (found version "3.11.7") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_abiclr.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_ahiclr.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_aircraft.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_aircraft_write.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_airs.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_altimeter.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_amsr.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_amsub.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_ascatsm.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_aod.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_aod_write.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_aod_write_testdatasets.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_atms.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_atms_write.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_atovs.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_atovs_write.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_cris.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_crisfsr.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_geocloud.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_gmihigh.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_gmihigh_write.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_gmilow.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_gnssro.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_gnssro_profile.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_groundgps.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_hirasfsr.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_hloswind.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_iasi.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_iasi_write.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_mwri.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_mwsfy3.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_oceancolour.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_oceansound.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_oceansound_truncate_profiles.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_radar_doppler_wind.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_radar_reflectivity.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_satsst.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_sattcwv.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_satwind.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_scatwind.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_scatwindchosen_write.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_seaice.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_seviriasr.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_seviriclr.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_sonde.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_sonde_history.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_sonde_mixed.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_sonde_time_displacement.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_sonde_truncate_profiles.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_sonde_write.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_sonde_write_mixed.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_ssmis.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_surface.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_surfacecloud.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//iodatest_odb_surfacesst.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//odb_default_name_map.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//odb_aircraft_name_map.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//odb_gnssro_name_map.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//odb_gnssro_profile_name_map.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//odb_oceansound_name_map.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//odb_radiance_name_map.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//odb_sonde_name_map.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//odb_surface_name_map.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//odb_surfacesst_name_map.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ioda/share/test/testinput//validation//ObsSpace.yaml -- Use test data from ioda-data repository -- --------------------------------------------------------- -- Adding bundle project ufo-data -- Cloning ufo-data from https://github.com/JCSDA-internal/ufo-data.git into /mnt/beegfs/caroline.viezel/mpas-bundle/ufo-data... -- /mnt/beegfs/caroline.viezel/mpas-bundle/ufo-data retrieved. -- Updating ufo-data to TAG 9e4eb40... -- git fetch --all @ /mnt/beegfs/caroline.viezel/mpas-bundle/ufo-data -- git fetch --all --tags @ /mnt/beegfs/caroline.viezel/mpas-bundle/ufo-data -- git checkout 9e4eb40 @ /mnt/beegfs/caroline.viezel/mpas-bundle/ufo-data -- --------------------------------------------------------- -- [ufo_data] (1.10.0) [9e4eb40] -- Feature TESTS enabled -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX Fortran CMake Warning (dev) at /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/cmake-3.27.9-46ruddm/share/cmake-3.27/Modules/CMakeFindDependencyMacro.cmake:76 (find_package): Policy CMP0144 is not set: find_package uses upper-case _ROOT variables. Run "cmake --help-policy CMP0144" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Environment variable BOOST_ROOT is set to: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/boost-1.84.0-ex6thn7 For compatibility, find_package is ignoring the variable, but code in a .cmake module might still use it. Call Stack (most recent call first): /mnt/beegfs/caroline.viezel/build-jedi/oops/oops-import.cmake:39 (find_dependency) /mnt/beegfs/caroline.viezel/build-jedi/oops/oops-config.cmake:83 (include) /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/cmake-3.27.9-46ruddm/share/cmake-3.27/Modules/CMakeFindDependencyMacro.cmake:76 (find_package) /mnt/beegfs/caroline.viezel/build-jedi/ioda/ioda-import.cmake:40 (find_dependency) /mnt/beegfs/caroline.viezel/build-jedi/ioda/ioda-config.cmake:64 (include) ufo-data/CMakeLists.txt:22 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/boost-1.84.0-ex6thn7/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found version "1.84.0") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: C CXX Fortran -- --------------------------------------------------------- -- Adding bundle project ufo -- Cloning ufo from https://github.com/JCSDA/ufo.git into /mnt/beegfs/caroline.viezel/mpas-bundle/ufo... -- /mnt/beegfs/caroline.viezel/mpas-bundle/ufo retrieved. -- Updating ufo to TAG 94d50d6... -- git fetch --all @ /mnt/beegfs/caroline.viezel/mpas-bundle/ufo -- git fetch --all --tags @ /mnt/beegfs/caroline.viezel/mpas-bundle/ufo -- git checkout 94d50d6 @ /mnt/beegfs/caroline.viezel/mpas-bundle/ufo -- --------------------------------------------------------- -- [ufo] (1.10.0) [94d50d6] -- Feature TESTS enabled -- Found MPI: TRUE (found version "4.1") found components: C CXX Fortran CMake Warning (dev) at ufo/CMakeLists.txt:51 (find_package): Policy CMP0144 is not set: find_package uses upper-case _ROOT variables. Run "cmake --help-policy CMP0144" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Environment variable BOOST_ROOT is set to: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/boost-1.84.0-ex6thn7 For compatibility, find_package is ignoring the variable, but code in a .cmake module might still use it. This warning is for project developers. Use -Wno-dev to suppress it. -- Found MPI: TRUE (found version "4.1") -- Found NetCDF: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/include;/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/include;/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-cxx4-4.3.1-636s4cb/include (found version "4.9.2") found components: C Fortran -- FindNetCDF defines targets: -- - NetCDF_VERSION [4.9.2] -- - NetCDF_PARALLEL [TRUE] -- - NetCDF_C_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/bin/nc-config] -- - NetCDF::NetCDF_C [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/lib/libnetcdf.so -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/bin/nf-config] -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/lib/libnetcdff.so -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX Fortran -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: C CXX Fortran -- CRTM FOUND; Including CRTM Observation Operator (3.1.1) -- RTTOV NOT FOUND; Excluding RTTOV Radiance Observation Operator -- GSW NOT FOUND: Excluding Marine Observation Operators -- ROPP NOT FOUND: Excluding GNSSRO Bending angle ROPP Operators -- GEOS-AERO NOT FOUND: Excluding AOD operator from GEOS -- OASIM NOT FOUND: Excluding Ocean Atmosphere Spectral Irradiance Model -- Download test data from https://bin.ssec.wisc.edu/pub/s4/CRTM/fix_REL-3.1.1.2.tgz -- Use test data from ufo-data repository -- Running ufo tests for tiers up to and including tier 1 -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/auxillary -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/auxillary/IASI_EmisEigenVec.dat -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/bmatrix -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/bmatrix/gnssro -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/bmatrix/gnssro/gnssro_bmatrix.txt -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/bmatrix/rttov -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/bmatrix/rttov/gmihigh_bmatrix_70_test.dat -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/bmatrix/rttov/amsr_bmatrix_70_test.dat -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/bmatrix/rttov/ssmis_bmatrix_70_test.dat -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/bmatrix/rttov/atovs_bmatrix_70_test.dat -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/bmatrix/rttov/iasi_bmatrix_70_test.dat -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/bmatrix/rttov/atms_bmatrix_70_test.dat -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/namemap -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/namemap/test_name_map.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/namemap/bayesian_name_map.yaml -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/rmatrix -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/rmatrix/gnssro -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/rmatrix/gnssro/gnssro_ba_rmatrix.nl -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/rmatrix/gnssro/gnssro_ba_rmatrix_latitude.nl -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/rmatrix/gnssro/gnssro_ba_rmatrix_latitude.nc4 -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/rmatrix/gnssro/gnssro_ba_rmatrix_avtemp.nl -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/rmatrix/rttov -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/rmatrix/rttov/ssmis_dmspf17_rmatrix_test.nc4 -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/rmatrix/rttov/atovs_metopb_rmatrix_test.nc4 -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/rmatrix/rttov/atms_noaa_20_rmatrix_test.nc4 -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/rmatrix/rttov/amsr_gcomw1_rmatrix_test.nc4 -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/rmatrix/rttov/gmihigh_gpm_rmatrix_test.nc4 -- Installing: /mnt/beegfs/caroline.viezel/build-jedi/ufo/resources/rmatrix/rttov/iasi_metopb_rmatrix_test.nc4 -- ESMFMKFILE not defined. This is the path to esmf.mk file. Without this filepath, ESMF_FOUND will always be FALSE. CMake Warning at /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/jedi-cmake-1.4.0-det7waz/share/jedicmake/Modules/FindESMF.cmake:114 (message): ESMFMKFILE does not exist Call Stack (most recent call first): CMakeLists.txt:65 (find_package) -- Could NOT find ESMF (missing: ESMF_LIBRARY_LOCATION ESMF_INTERFACE_LINK_LIBRARIES ESMF_F90COMPILEPATHS) (Required is at least version "8.3.0") -- --------------------------------------------------------- -- Adding bundle project MPAS -- Cloning MPAS from https://github.com/MPAS-Dev/MPAS-Model into /mnt/beegfs/caroline.viezel/mpas-bundle/MPAS... -- /mnt/beegfs/caroline.viezel/mpas-bundle/MPAS retrieved. -- Updating MPAS to TAG v8.2.1... -- git fetch --all @ /mnt/beegfs/caroline.viezel/mpas-bundle/MPAS -- git fetch --all --tags @ /mnt/beegfs/caroline.viezel/mpas-bundle/MPAS -- git checkout v8.2.1 @ /mnt/beegfs/caroline.viezel/mpas-bundle/MPAS -- [OPTION] MPAS_CORES: init_atmosphere;atmosphere -- [OPTION] MPAS_DOUBLE_PRECISION: ON -- [OPTION] MPAS_PROFILE: OFF -- [OPTION] MPAS_OPENMP: OFF -- [OPTION] BUILD_SHARED_LIBS: ON -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: Fortran -- Found MPI: TRUE (found version "4.1") found components: Fortran -- Found NetCDF: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/include;/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/include;/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-cxx4-4.3.1-636s4cb/include (found version "4.9.2") found components: Fortran C -- FindNetCDF [/mnt/beegfs/caroline.viezel/mpas-bundle/MPAS/cmake/Modules/FindNetCDF.cmake]: -- - NetCDF_VERSION [4.9.2] -- - NetCDF_PARALLEL [TRUE] -- - NetCDF_C_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/bin/nc-config] -- - NetCDF::NetCDF_C [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/lib/libnetcdf.so -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/bin/nf-config] -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/lib/libnetcdff.so -- Found PnetCDF: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/parallel-netcdf-1.12.3-nvyvrys/bin/pnetcdf-config (found version "1.12.3") found components: Fortran -- FindPnetCDF: -- - PnetCDF_VERSION [1.12.3] -- - PnetCDF_PREFIX [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/parallel-netcdf-1.12.3-nvyvrys] -- - PnetCDF Components Found: Fortran;C;CXX -- Found PIO: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/parallelio-2.6.2-xnq7wer found components: Fortran C -- FindPIO: -- - PIO_PREFIX [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/parallelio-2.6.2-xnq7wer] -- - PIO Components Found: Fortran;C;SHARED -- Configure MPAS for internal ESMF CPP_EXTRA_FLAGS: -traditional;-DCORE_INIT_ATMOSPHERE;-DMPAS_NAMELIST_SUFFIX=init_atmosphere;-DMPAS_EXE_NAME=mpas_init_atmosphere;-DMPAS_GIT_VERSION=v8.2.1;-DMPAS_BUILD_TARGET=GNU CPP_EXTRA_FLAGS: -traditional;-DCORE_ATMOSPHERE;-DMPAS_NAMELIST_SUFFIX=atmosphere;-DMPAS_EXE_NAME=mpas_atmosphere;-DMPAS_GIT_VERSION=v8.2.1;-DMPAS_BUILD_TARGET=GNU -- MPAS-Data source dir: /mnt/beegfs/caroline.viezel/build-jedi/_deps/mpas_data-src -- --------------------------------------------------------- -- Adding bundle project mpas-jedi-data -- Cloning mpas-jedi-data from https://github.com/JCSDA-internal/mpas-jedi-data.git into /mnt/beegfs/caroline.viezel/mpas-bundle/mpas-jedi-data... -- /mnt/beegfs/caroline.viezel/mpas-bundle/mpas-jedi-data retrieved. -- Updating mpas-jedi-data to TAG 12cdc56... -- git fetch --all @ /mnt/beegfs/caroline.viezel/mpas-bundle/mpas-jedi-data -- git fetch --all --tags @ /mnt/beegfs/caroline.viezel/mpas-bundle/mpas-jedi-data -- git checkout 12cdc56 @ /mnt/beegfs/caroline.viezel/mpas-bundle/mpas-jedi-data -- --------------------------------------------------------- -- Adding bundle project mpas-jedi -- Cloning mpas-jedi from https://github.com/JCSDA/mpas-jedi into /mnt/beegfs/caroline.viezel/mpas-bundle/mpas-jedi... -- /mnt/beegfs/caroline.viezel/mpas-bundle/mpas-jedi retrieved. -- Updating mpas-jedi to TAG 3.0.0.mmm... -- git fetch --all @ /mnt/beegfs/caroline.viezel/mpas-bundle/mpas-jedi -- git fetch --all --tags @ /mnt/beegfs/caroline.viezel/mpas-bundle/mpas-jedi -- git checkout 3.0.0.mmm @ /mnt/beegfs/caroline.viezel/mpas-bundle/mpas-jedi -- --------------------------------------------------------- -- [mpasjedi] (3.1.0) [e3b7c9c] -- Feature TESTS enabled -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX Fortran -- Found MPI: TRUE (found version "4.1") found components: CXX Fortran CMake Warning (dev) at mpas-jedi/CMakeLists.txt:38 (find_package): Policy CMP0144 is not set: find_package uses upper-case _ROOT variables. Run "cmake --help-policy CMP0144" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Environment variable BOOST_ROOT is set to: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/boost-1.84.0-ex6thn7 For compatibility, find_package is ignoring the variable, but code in a .cmake module might still use it. This warning is for project developers. Use -Wno-dev to suppress it. -- FindPnetCDF: -- - PnetCDF_VERSION [1.12.3] -- - PnetCDF_PREFIX [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/parallel-netcdf-1.12.3-nvyvrys] -- - PnetCDF Components Found: Fortran;C;CXX -- Found MPAS: (version: "8.2.1") (components: SHARED;OpenMP;DOUBLE_PRECISION;core_atmosphere;core_init_atmosphere) -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- Configure mpas-jedi for internal ESMF -- Found LAPACK: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/openblas-0.3.24-o2yjimd/lib/libopenblas.so;-lpthread;-lm;-ldl -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: Fortran -- Could NOT find MKL (missing: MKL_LIBRARIES MKL_INCLUDE_DIRS) -- FFTW targets: -- FFTW::fftw3 (double precision) [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/fftw-3.3.10-fvmqfav/lib/libfftw3.so] -- Found FFTW: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/fftw-3.3.10-fvmqfav/include found components: double -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: C CXX Fortran -- Found MPI: TRUE (found version "4.1") -- Found NetCDF: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/include;/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/include;/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-cxx4-4.3.1-636s4cb/include (found version "4.9.2") found components: Fortran -- FindNetCDF defines targets: -- - NetCDF_VERSION [4.9.2] -- - NetCDF_PARALLEL [TRUE] -- - NetCDF_C_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/bin/nc-config] -- - NetCDF::NetCDF_C [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-c-4.9.2-4jx4ogm/lib/libnetcdf.so -- - NetCDF_Fortran_CONFIG_EXECUTABLE [/mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/bin/nf-config] -- - NetCDF::NetCDF_Fortran [SHARED] [Root: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz] Lib: /mnt/beegfs/jose.aravequia/spack-install/mpas-gcc-mpich/gcc/12.2.0/netcdf-fortran-4.6.1-4seqzzz/lib/libnetcdff.so -- Use crtm test data provided by ufo in /mnt/beegfs/caroline.viezel/mpas-bundle/test-data-release/crtm/fix_REL-3.1.1.2/fix/ -- Use test data from mpas-jedi-data repository -- BRANCH/TAG is available in mpas-jedi-data -- --------------------------------------------------------- -- Bundle mpas-bundle -- --------------------------------------------------------- -- --------------------------------------------------------- -- Build summary -- --------------------------------------------------------- -- system : [headnode.egeon.cptec.inpe.br] [Linux-4.18.0-305.25.1.el8_4.x86_64] [linux.64] -- processor : [x86_64] -- endiness : Little Endian -- IEEE [] -- build type : [Release] -- timestamp : [20250904161502] -- install prefix : [/usr/local] -- bin dir : [/usr/local/bin] -- lib dir : [/usr/local/lib64] -- include dir : [/usr/local/include] -- data dir : [/usr/local/share/mpas-bundle] -- cmake dir : [/usr/local/lib64/cmake/mpas-bundle] -- --------------------------------------------------------- -- C -- GNU 12.2.0 -- compiler : /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/gcc-12.2.0-mxajvnuix37kg5dxz46b32nd6qvnn2ll/bin/gcc -- flags : -pipe -O3 -DNDEBUG -- link flags : -- CXX -- GNU 12.2.0 -- compiler : /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/gcc-12.2.0-mxajvnuix37kg5dxz46b32nd6qvnn2ll/bin/g++ -- flags : -pipe -O3 -DNDEBUG -- link flags : -- Fortran -- GNU 12.2.0 -- compiler : /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/gcc-12.2.0-mxajvnuix37kg5dxz46b32nd6qvnn2ll/bin/gfortran -- flags : -O3 -DNDEBUG -funroll-all-loops -finline-functions -- link flags : -- linker : /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/binutils-2.43.1-pdzg4agwdh7fx7rczycpnmp6uzaqugss/bin/ld -- ar : /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/binutils-2.43.1-pdzg4agwdh7fx7rczycpnmp6uzaqugss/bin/ar -- ranlib : /mnt/beegfs/jose.aravequia/ispack-1.9.2/spack/opt/spack/linux-rhel8-zen2/gcc-12.2.0/binutils-2.43.1-pdzg4agwdh7fx7rczycpnmp6uzaqugss/bin/ranlib -- link flags -- executable [ -Wl,--disable-new-dtags ] -- shared lib [ -Wl,--disable-new-dtags ] -- static lib [ -Wl,--disable-new-dtags ] -- install rpath : $ORIGIN/../lib64 -- common definitions: -- --------------------------------------------------------- -- Feature summary -- --------------------------------------------------------- -- The following features have been enabled: * TESTS, mpas-bundle: Enable the unit tests, oops: Enable the unit tests, vader: Enable the unit tests, saber: Enable the unit tests, ioda: Enable the unit tests, ufo_data: Enable the unit tests, ufo: Enable the unit tests, mpasjedi: Enable the unit tests * Python, Build Python bindings using pybind11 -- The following OPTIONAL packages have been found: * Python3 * pybind11 * Git * PkgConfig * Perl -- The following REQUIRED packages have been found: * ecbuild (required version >= 3.3.2) * boost_headers (required version == 1.84.0) * Boost * PnetCDF * PIO * MPAS (required version >= 8.0) * Eigen3 * atlas (required version >= 0.35.0) * jedicmake * BLAS * LAPACK * oops * vader * FFTW * saber (required version >= 1.10.0) * Threads * HDF5 * gsl-lite * udunits (required version >= 2.2.0) * OpenMP * eckit * ioda (required version >= 2.9.0) * MPI * NetCDF * ufo (required version >= 1.10.0) -- The following OPTIONAL packages have not been found: * nlohmann_json * nlohmann_json_schema_validator * gsibec (required version >= 1.2.1) * bufr (required version >= 12.0.1) * bufr_query * gsw * geos-aero * oasim * ESMF (required version >= 8.3.0) * rttov (required version >= 12.1.0) * ropp-ufo * MKL -- Configuring done (5473.1s) -- Generating done (234.2s) -- Build files have been written to: /mnt/beegfs/caroline.viezel/build-jedi